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  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #1

    SMRTanalysis (v.1.4.0) for CentOS - missing a FORTRAN library

    Install tarball for the CentOS install of SMRTanalysis on PacBio DevNet was missing (at least until yesterday) a required FORTRAN library (libgfortran.so.3).

    This was causing analyses submitted via the SMRTPortal front-end to fail. The error messages were not very helpful in identifying the problem (PacBio tech support helped determine the missing library).

    Hopefully the software on the PacBioDevNet will be amended to include the missing library going forward.

    In case someone else has been having a problem with SMRTPortal jobs (v.1.4.0) on CentOS, I wanted to document the solution.
    Last edited by GenoMax; 03-08-2013, 07:09 AM.
    Tags: 1.4.0, centos, smrtanalysis
    • cowlesav
      Junior Member
      • Mar 2013
      • 1
      #2
      On centos 5 you need to install gfortran44-devel package, the update to 1.4 requires fortran 4.4 not the standard 4.1

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