146 results in 0.0039 seconds.
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SNP Bacterial Genomes per year
I am looking at SNP trees for bacterial genomes (mostly N. gonorrhoeae, S. aureus and E. faecium) and I am following outbreaks in society and on hospital... -
VCF to RQTL format for genetic mapping?
Hi everyone,
I am new to this forum and bioinformatic methods. I have whole genome resequencing data for 180 haploid individual from same mother... -
Detecting Known, Low Frequency SNPs in evolving bacterial communities
Hi all,
I'm using NGS data to observe how a community of congenic bacteria evolve over time. Basically, I'm starting by inputting several... -
SNP calling using samtools
Hi all,
I have RNA-seq paired-end data from Illumina and I am using BWA-mem for mapping and samtools for SNP calling. I wanted to understand... -
SNP and allele concept
I did exom sequencing and annotate the VCF
now I have somthing like this
chr Ref Alt condition
chr1 A ... -
Control sample for human germline SNP discovery?
Hi,
This may be a naive question. We are new to SNP discovery using sequencing. We have designed custom AmpliSeq DNA sequencing panel to look for... -
Tools to check consistency between VCF genotypes & pedigree-stated sex/relationship?
X-post from Biostars.
We're currently trying to do identity checks on targeted genome sequencing data from ~15K samples. Our target panel... -
Postdoc position and bioinformatician position in cancer genomics
A computational postdoc position and a bioinformatician position are available in my recently established Laboratory of Bioinformatics and Computational... -
Help filtering variants from TSV file using text processing programming language
Hi:
I'm looking for some guidance on using text processing programming language to filter and summarize SNP calls based on a variety of... -
Webinar on Analysis of Variants using GeneSpring GX 14.9 on 6 Dec 2017
Live webinar on Analysis of Variants using GeneSpring GX 14.9 by Dr. Dipa Roy Choudhury on 6 Dec 2017, 8 AM PST
Abstract:
Variant analysis... -
Validating SNP calls quality
Hi,
I'm working with GBS data and i used Stacks and ipyrad to call de novo based SNP's, apart from the quantity of SNP's called by each software... -
RNA Modification Database and The Map of RNA Modifications
We have developed RMBase v2.0 to decode the map of RNA modifications (>100 different modification types) , as well as their relationships with microRNA... -
how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analy
hi everyone
i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis... -
how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analy
1111111111111111Last edited by rezakhalkhali; 07-21-2017, 02:30 AM. -
Research Officer - Systems Genomics
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