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  • R.66
    Junior Member
    • Jul 2017
    • 2
    #1

    how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analy

    hi everyone

    i have an annotated vcf file (using snpEff) and now i want to extract gene names for non-synonymous SNPs and then do GO analysis by DAVID. how can i do it and how can i rank genes containing most non-synonymous snps.

    thanks in advance
    Tags: go analysis, non-synonymous, snp, snpeff
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