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Artemis can't read my indel vcf file
I have got raw SNPs and INDELs in separate vcf files using GATK. I tried to view that on Artemis after uploading my embl and fasta reference file. Artemis...
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very short deletion messes up SAMtools SNP calling
Hi,
I used Bowtie to align a solid read to the human genome, and now I'm trying to use samtools to call snps. When I use the pileup function,...
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Interpretation of columns in MAQ SNP output?
Hi all-
Apologies if this information has been posted elsewhere - I wasn't able to find what I was looking for searching the forums....
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Software for Sorting SNPs/ InDels by Affect?
How are folks sorting SNPs and indels into different classes based on their effect on coding sequence? Synonymous/ nonsynonymous/ changes to splice junctions,...