Hi, I recently downloaded some solid short reads (35 bp), single end, and convert them in cfasta with ahi-dump.
I found that there are...
152 results in 0.0031 seconds.
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mapping 35bp solid reads with tophat unsuccessful
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SOLiD for Genomes
Does SOLiD work well for genomes with a lot of repeats? Theoretically it should, but in practice?
Thanks, -
wariobrega started a topic GATK Haplotype Caller calls Indels in SOLID reads that IGV does not Displayin SOLiDGATK Haplotype Caller calls Indels in SOLID reads that IGV does not Display
Hello everyone,
I am Daniele and I'm a Junior Researcher in a private foundation in Rome.
Before explaining my problem, let... -
For Sale SOLiD
For Sale:
(1) ABI 5500xl SOLiD sequencer
(1) Applied Biosystems SOLiD 4 Analyzer
(1) Applied Biosystems... -
Tophat Does not Work with SOLiD Reads
I have been trying for several weeks to run Tophat on SOLiD reads but I got the same error message every time. While I searched a lot of forums and related...Last edited by Fernas; 01-30-2015, 03:46 AM. -
Proper regex to mark duplicates using Picard tools on SOLiD data
Hi,
I'm having trouble removing duplicates using Picard tools on SOLiD data. I get a regex not matching error.
The reads... -
Bfast
Can you help me?
I have read the paper about BFAST, but I am sure I can't index well. My data is about large genome (~2.7Gbp), and the source... -
Convert 0123 into nucleotides from a SOLiD srf file.
I downloaded some .srf files from GEO, which are RNA-seq data. By using the Staden Package, I was able to do the followings
When I use... -
Blasting human SOLiD short reads against human genome reveals no sig results
I have converted SOLiD SRA to fasta using fastq-dump.
Then, I used the Galaxy groomer to remove the adapter. After that, I wrote a script... -
help with counting reads (only 0 counts were returned)
Hi,
This is my very first experience analysing RNAseq data. My goal is to do differential analysis between two strains of a bacteria. So far, i... -
Can Pindel applied to SOLiD data?
Dear All
Just want to know if anyone has relevant experiences in calling INDELS using Pindel on SOLiD data. We used Pindel on Illumina samples... -
Colorspace bis-seq data analysis on Solid
What is your recommendation for analyzing bisulphit data? There are very few tools with various output (generally non human readable) and performance... -
SAM files aligned by Bowtie - Mystified.
Hi,
This is one of my first forays in SOLID data so please bear with me if the question is basic;
I had aligned SOLID data... -
aligning .sra files in colorspace with fasta reference genome
Hello
I am currently doing an intership in bioinformatics and I am looking for a good pipeline to process abi SOLiD data coming from the NCBI sra-data... -
Mapping reads against metabolical maps
I need to make a functional analysis of a metagenome and therefore have to map a lot of color space SOLiD reads 75 bp each (sadly, assembly isn't any...
