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wimufi started a topic unmapped reads in Bowtie causing problems in SAMtools?

in SOLiD

02-11-2010, 08:24 AM
unmapped reads in Bowtie causing problems in SAMtools?

Hi, I am having some trouble running some SOLiD data through bowtie. I've converted from csfasta/qual files to fastq using solid2fastq (v0.6.3c) and...

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