Dear SEQanswers community,
i would like to ask a more general question about exome sequencing, and mutation analysis. I have mainly analyzed...
6 results in 0.0029 seconds.
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Appropriate methodology for the analysis of whole exome sequencing cancer data
Last edited by mbgventer; 04-26-2018, 01:47 AM. -
The problem with sensitivity analysis of somatic variant caller
Hello!
I'm working on somatic variant identification from cancer samples. So, I try to simulate Illumina paired-end read with known variants... -
MuTect and RNA-seq
Hi all,
I was wondering if anyone has used MuTect to call variants from RNA-seq data? I have total RNA-seq data for tumor and matched normal... -
Tumor-only variant calling
I'm attempting to call SNVs in tumor samples without a paired normal sample. Some of these tumor samples can have low purity, so the allelic frequency... -
VarScan: somatic mutations in heterozygous sites?
Does VarScan2 find somatic mutations that arose in loci where norm was heterozygous? As far as I can tell, it classifies somatic changes as "Somatic"... -
GATK indel raligner after bfast alignement
Hello,
i'm attempting to perform a pipeline to find out somatic mutations of tumor-normal samples sequenced by Illumina paired end reads...
