Hi,
First time using SRMA, followed the user guide on source forge. Left all variables as defaults. It came up with this error. Any suggestions...
7 results in 0.0020 seconds.
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SRMA - Error - cs TAG
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Short Read Micro re-Aligner Paper
Improved variant discovery through local re-alignment of short-read next-generation sequencing data using SRMA.
Abstract
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SRMA lose RG information
when i finished SRMA re-align, i found that some of the reads lost its' RG (read group) information, GATK can not handle the database without RG information... -
another question about SRMA
i run a 5G database, it is 64* coverage, the outputBAM is less than 4G. is this normal? -
question about SRMA
i am a freshman in this field, i am trying to use SRMA to realign my data, but i don't know how to generate a ranges file for SRMA, it is a txt file,... -
srma-0.1.8 error - Cannot check readability of null file.
Trying to use srma for the first time, version 0.1.8. Here's the invocation:
...Code:java -jar ./srma-0.1.8.jar INPUT=x.sam REFERENCE=chr22.fa
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Short Read Micro re-Aligner (beta release)
We are pleased to announce the beta release of new tool called SRMA: the short read micro re-aligner. We have tested this method on human cancer resequencing...
