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  • rlh
    Member
    • Oct 2010
    • 12

    #1

    SRMA lose RG information

    when i finished SRMA re-align, i found that some of the reads lost its' RG (read group) information, GATK can not handle the database without RG information for the subsequent steps.
    anyone can help me?
  • nilshomer
    Nils Homer
    • Nov 2008
    • 1283

    #2
    Originally posted by rlh View Post
    when i finished SRMA re-align, i found that some of the reads lost its' RG (read group) information, GATK can not handle the database without RG information for the subsequent steps.
    anyone can help me?
    Submit this request to [email protected] and it may just be fixed for you .

    Comment

    • rlh
      Member
      • Oct 2010
      • 12

      #3
      Originally posted by nilshomer View Post
      Submit this request to [email protected] and it may just be fixed for you .
      thank you! i will do what you suggest.

      Comment

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