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Any Tools/Workflows For PacBio IsoSeq SSR Analysis?
We have used the SMRT(Pacific Biosciences) sequencing system PacBio RS II to generate cDNA sequences. After isoform-level clustering, polishing and trimming...
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SSR from denovo assembled genome
I am interested in finding SSR markers in our recently sequenced plant genome. Our plant genome is non-model and it is tetraploid. It was sequenced in...
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Fragment analysis; microsatellite or SSR/STR
Has anyone been using next gen or preferably illumina for fragment analysis.
Right now my project are running multiplex for Sanger 3130xl machine...
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SSR screening:better tools than RepeatFinder?
Hi ,
has anybody experience using SSR tools for repeat discovery in draft genomes? I will test Repeatfinder and Sputnik but I was wondering if...