6 results in 0.0053 seconds.
-
tophat alignment score and parameters
I am using tophat2 for my rna seq data set. I mostly always use default options for tophat. I have some doubts when i see the accepted.hits.bam file... -
Can't install TopHat
Hi,
I'm trying to install Tophat. I installed bowtie, samtools and boost (all they are ok, I think).
So, I do:
./configure... -
Tophat v2.0.4 memory usage
I have a question about memory use by the new version of Tophat (v2.0.4). We ran the previous versions of Tophat on our cluster over 8 threads with 2... -
New version of TopHat intermediary files
I am mapping some data using the new version of TopHat (2.0.4), that used the Bowtie2 to map the reads.
When I am looking at the log files... -
Tophat 2.0.3 and 2.0.4 failed in Mapping left_kept_reads to genome....
Hi!
I am running my RNAseq data set with Tophat 2.0.3 and 2.0.4 and I got a fail when Bowtie start to map the "left_kept_reads"... -
Tophat/Bowtie2 inconsistency in number of paired reads
Hi all,
I find when I align using bowtie2 all of my reads are paired, and when I align using tophat none of my reads are paired:
Bowtie2...
