Are there any tools or R packages for calculating the new amino acid chain, given an indel?
I've been asked to provide a set of putative...
9 results in 0.0020 seconds.
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Tool or package to convert new peptide sequence from frameshift variant?
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Problem with UCSC GTF files??
Hi,
I would like to ask for some opinion and advice related to the different available GTF-file sources for annotated genes.(mm10, but... -
Transcripts and exon number in Integrative Genomics Viewer (IGV)
Hi..
I am doing variant analysis and I want to know the exon number of a variant using IGV. In IGV it shows different exon numbers for... -
UTR region misassembly?
Dear folks,
Helloo!
During my RNA-seq assembly, I found many misassemble or SNP or indel in UTR region.
I... -
[Cufflinks] Problem in terminal exon assembly
Hello,
I used Cufflinks (v.2.0.2) to assemble a complete transcriptome without providing any GTF references just to check the quality of... -
Table of transcript variant 1
Hi all,
I really hope that someone could help me.
I would like to have a table that reports the information about the all the transcripts... -
Isoform expression quanification from rna seq: flood of tools
I'm trying to figure out which expression quantification program to integrate into the RNA analysis pipeline at my centre.
Since the review... -
Coverage
Dear All,
I am curious to know for a RNAseq experiment what would be the ideal statistics to measure the coverage of reads across... -
MCF-7 Cell Line Transcript Reference Annotation Needed
If you could assist in any way, I'd greatly appreciate it.
PROBLEM: I recently assembled a handful of mRNA isoforms from a collection...
