Dear Community!
I am searching for a skillful PhD student for my recently funded project (UAEU-UPAR) on non-canonical peptides in Medicago trun...
12 results in 0.0049 seconds.
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PhD student in computational proteomics at UAEU
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Getting protein fasta from RNAseq BAM file (human) paying attention on repeats
Hi everybody,
I have several RNAseq BAM files (mapped with BWA and GATK IndelRealigner) of cancer patients of which I should compare if... -
Protein prediction from transcriptomic data
I have a fasta file containing transcripts obtained from rna-seq data. How do I get these sequences into their protein equivalents? I know expasy translate... -
Identify Translated Sequence in Batch
Does anyone have any suggestions on how to identify in batch for isoseq data the start and stop positions for predicted gene sequence?
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Unable to find ORF for fasta file
Hi,
I have a list of ids for which I want to extract the corresponding nucleotide sequences from transcritptome.fasta file. I loaded the...Last edited by dena.dinesh; 02-18-2015, 04:10 AM. -
Biopython Translate function
Hi all!
I'm having problems using Biopython to translate sequences into all 3 forward reading frames.
I wrote this script... -
Translating nucleotide fasta file to AA
What can I use to translate a large number of short nucleotides to all AA open reading frames?
I have a 27 GB illumina library in fasta... -
RNA Seq to Protein Seq Conversion
Hi,Am new here to the group and probably my first question as a Newbie to RNA seq data analysis. I have three question to ask here.
May... -
six frame translation
Hello everyone,
We have a RNAseq denovo assembly. From these cDNA sequences we want to get the protein sequences. How can i decide which frame... -
refGene.txt sizes and frameshifts of exons not consistent
I need to generate amino acid sequences and substitutions from genomic SNPs and reference genome sequences with gene annotations. Currently I'm doing... -
Stand alone software equivalent to FrameBot
Hello All
Can somebody recommend a standalone software or code equivalent to FRAMEBOT web Server?
The Framebot serves the... -
Nucleotide to amino acid translation + synonymous/non-synonymous count
Hi everybody,
I'm going to perform a SNP calling using SAMtools.
The source data consist of an invertebrate mitochondrial transcriptome...
