Apologies for the simple question, but I can't seem to find a straight forward answer searching online.
I created interleaved fastq files...
52 results in 0.0024 seconds.
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Can trimmomatic be used on paired interleaved fastq files?
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Trimming Fastq Reads for kallisto
Does kallisto match reads that are below that of the K-mer length used to
create the index? For example, the default K-mer value for creating the... -
how to treat read-through in mapping for differential expression analysis
hi all
I got 2x150 reads that I used to perform denovo assembly using Trinity, with Trimmomatic option on. Problem is, that nearly 35-40% of reads... -
Assembly with trimmed FASTQ files fail
Hello,
spades is working fine when I am using untrimmed fastq files.
I am using Trimmomatic to trim reads (SLIDINGWINDOW:30:20)... -
Multiple indexes per sample how to trim with Trimmomatic?!
Hi all,
I received my HiSeq Illumina RNAseq data and want to run trimmomatic to remove bad quality reads and trim adapters. I have used... -
Trimming seq data using Trimmomatic confirmation
Dear all,
I received my HiSeq Illumina RNAseq data and want to run trimmomatic to remove bad quality reads and trim adapters. I have used... -
Trinity Adapter Trimming: Clontech and Illumina?
Apologies for what is an often repeated topic, but with (I believe) a new twist.
I have several RNA libraries that I amplified with the... -
Trimmomatic memory use
I assume that Trimmomatic processes the reads sequentially, so I don't understand why a run with paired-end fastq input could take >10GB of memory... -
Quality Trimming read loss - Trimmomatic
Hello community,
I plan to do a reference assisted genome assembly for a yeast genome.
I have some questions regarding the trimming... -
Trimmomatic: Not trimming..
Hey! I am trying to use Trimmomatic to trim Illumina adapters sequences from my TruSeq Small RNA library SE 75bp reads off of a HiSeq but I am unsuccessful......Last edited by lchippy; 11-12-2017, 11:34 AM. -
5' Kmers problem with whole genome re-sequencing data
Hi all,
I am having some issues with getting rid of kmers in my sequencing data sets. We have re-sequenced several African buffalo genomes... -
Trimmomatic not working correctly
Hello all,
I am very new to trimmomatic and running into problems. My command line is:
C:\Users\Munster>java -jar "c:\Program... -
How do i trim multiple adapters from my RNAseq reads?
Hi all,
I am using Galaxy and I want to remove the universal adapters as well as the index adapters in each data file of my RNAseq data.... -
Trimmomatic adapter file vs Custom made file
Hello everyone,
I am working with TruSeq paired end data (150bp). I have a doubt regarding the adapter file provided in Trimmomatic... -
Trimmomatic - unknown trimmer error?
Hi all,
I am really struggling with Trimmomatic these days and the frustration level is rising (I have to meet a deadline). For multiple...
