7 results in 0.0056 seconds.
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converting between genome and transcripts coordinates
I need to calculate the exon distance from regions in UTR to the CDS start and I have mm10 genomics coordinates (bed file). I prefer to use refSeq transcripts.... -
UTRs in mRNA sequencing data
I downloaded some primary tumour mRNA-sequencing bam files from TCGA for the breast cancer study. I was wondering if anybody knew whether untranslated... -
Test for read coverage uniformity of genes?
Does anyone know of a program/package/method to test coverage uniformity of reads over individual genes?
My differential expression analysis... -
UTR region misassembly?
Dear folks,
Helloo!
During my RNA-seq assembly, I found many misassemble or SNP or indel in UTR region.
I... -
Annotate coordinates
Hi all
I am wondering if you know a way to determine if a set of chromosome coordinates (chr1:101598917;chr1:101598918;ect), lays in CDS, UTR,... -
Looking for IRES in UTRs
I'm not sure if this is the right forum in which to be posting this question but I'm sure there are some RNA folding gurus out there. I've got some viral... -
TargetScan v6.1 genome coordinates
I'm trying to find or create genome coordinates for TargetScan v6.1, released March 2012. UCSC provides a track from v5.1, but nothing newer. This thread...
