Annotate coordinates

giuliano stirparo

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Join Date: Nov 2011

Posts: 6
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Annotate coordinates

01-09-2013, 09:31 AM

Hi all
I am wondering if you know a way to determine if a set of chromosome coordinates (chr1:101598917;chr1:101598918;ect), lays in CDS, UTR, Flanking region etc.
In particular the sets of coordinates are SNPs and I wish to keep those that lay in CDS region.
Thank you
Giuliano
Tags: cds, coordinates, snp, utr
miroslav

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Join Date: Feb 2011

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01-10-2013, 11:55 PM

Hi Guliano,
If you have SNP rs designations you can try NCBI batch query - chromosome report
miroslav
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