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How can i adjust the VAF values based on newly correctly estimated tumor purity
I have been provided with a MAF file which includes the VAF for each SNV. However, purity was incorrectly estimated and then the newly corrected estimated... -
Pindel and GATK AD Concordance
I was hoping to get some advice on working with the AD field for variants in VCFs produced by Pindel and Pindel2VCF.
My lab has a variant... -
Strange VAF distribution across SNP positions in WGS sample
Hi everyone,
I have a germline sample that underwent whole genome sequencing at 30x on Illumina Hiseq. After extracting the VAFs at all...
