Dear all,
I am trying to apply the hisat2_extract_snps_haplotypes_VCF.py script to merged VCF files: one file per human chromosome, all...
8 results in 0.0029 seconds.
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HISAT2 / hisat2_extract_snps_haplotypes_VCF.py: only first variant in output
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Convert VCF files to BCF files
I know this question might sound stupid but is there any way we could convert vcf files to bcf files?
I created vcf files to each genome... -
problem in opening annovar output file in Varsifter
Hi all ,
I ran Annovar and got the output from it. It gives output in CSV format.
Now I need to filter them using Varsifter, which... -
Require dbsnp file in vcf format for mycobacterium tuberculosis.
I have to run GATK's Base Quality Score Recalibration for the organism Mycobacterium Tuberculosis. One of the input files is a dbsnp file for this bacteria.... -
Is there a tool that converts TXT, BED, GFF format to VCF?
Hi,
I would like to ask if there is tool out there that would convert variants in a certain file format (such as .txt, .gff, .bed) to... -
why the vcf has so little high_quality bases mapping on the reference?
hi,all
Now,i have met a problem when using samtools to get SNP call. In the vcf file generated from samtools, i find high_quality bases so little... -
How to interpret VCF quality scores?
In [variant call format (VCF)][1] files produced at the end of the samtools mpileup variant detection [pipeline][2] there are two quality scores:
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How to Call Genotypes on NGS datasets for linkage
Hi there,
there are several decent variant callers for NGS data sets, such as samtools, GATK, ... that report variants to a reference in vcf4.0...
