Hi, I have been running velveth and velvetg for mapping on a reference file (Columbus extension) but I am getting the following error:
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5 results in 0.0023 seconds.
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Velvet Columbus (No roadmap)
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Assembly paired-end sequences with Velvet
I have sequences from illumina HiSeq 2000. I'll show you the sequence data that I have a bacteria.
fernando@InvDllo04[Lactobacillus] grep... -
help using velvet for de novo assembly
Hi everyone, i'm trying to run de novo assembly using velvet on short (100bp long) paired end reads.
I first ran velveth and it created only two... -
Miseq assemblies
Bacteria sequencing. Nextera XT library prep. Triplicate technical replicates from a single MiSeq run 2 x 250 PE, de novo assembly on MiSeq gives ~450...Last edited by RGLADSTONE; 01-11-2013, 02:28 AM. -
ins_length in velvet
Please excuse my ignorance but I'm a bit confused with the -ins_length flag in velvet.
The Velvet manual says:
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