Hello SEQanswers Community,
I am currently facing issues with running the Variant Effect Predictor (VEP) and vcf2maf in a Conda environment...
7 results in 0.0029 seconds.
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Trouble Running VEP in Conda Environment Due to Perl DBD::mysql Error
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Failed connection with Ensembl VEP script on port 3337
I'm using the VEP (Variant Effect Predictor) standalone Perl script to annotate some variants, it connects to the Ensembl MySql database. I used the same... -
Human Ancestral Alleles Fasta on HG38
Hi,
I'm fairly new to this forum, so I don't really know if I'm in the right section, but here goes:
I'm looking for a fasta... -
VEP variation cache
Hi all
When running VEP with ensembl annoation files I get errors of the form "Could not find variation cache for Chromosome..."... -
VEP variant effect predictor
Hi all
How to output the html summary AND the plain text stats file when using Ensembl's variant effect predictor script (VEP) ?
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SNP deleterious or tolerated? (VEP tool)
Dear members
I used VEP (Variant Effect Predictor) tool to annotate SNPs. I used the option "--sift b" to obtain SIFT scores,... -
Some help with Variant Effect Predictor (VEP)
Hi guys,
I've run the VEP tool and got some results that don't make sense when I checked the allele used to calculate the consequence associate...
