Hello everyone,
I have been trying to use the software CoCoRV (https://bitbucket.org/Wenan/cocorv/src/master/) to analyse rare variants in...
14 results in 0.0022 seconds.
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CoCoRV reference file? (WES)
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WGS vs WES: Which Genetic Sequencing Method is Right for You?
Whole genome sequencing (WGS) and whole exome sequencing (WES) are two of the most popular methods used in modern genetic research. While both methods...
Last edited by Novogene; 06-21-2024, 12:43 PM. -
Surprising Alignment
Hi,
I have been working with some WES files and getting surprising results, in which very rare variants are being found much more often than... -
Combining fastq files from paired-end WES prior to trimming and alignment
Hi there!
I've tried to find answers to questions that apply to my scenario, but I'm still unsure about the kosher way to approach this....Last edited by reliscu; 05-08-2021, 12:34 PM. -
Is a compositional bias in Sequence Content of initial bases in WES reads normal?
Per Base Sequence Content
Any experienced Whole Exome Sequencing analyst/experimentalist:
the Per Base Sequence Content... -
Whole Exome analysis on a 1500 € standard PC, is that possible?
Whole-Exome Analysis on a Mainstream Desktop PC
We are regularly asked what kind of computer is needed to analyze Whole Exome data. We have tested... -
GATK Germline CNV caller
Hi everyone,
I was wondering if anyone has experience working with GATK Germline CNV caller?
I am recently trying to work with this... -
diagnostics labs - what do they use?
Hi all, just wondering what the current state-of-play is with regards to clinical diagnostics labs, whether in the UK, European, or US context. Are small... -
detection of somatic mutations using RNA seq data for tumor samples paired with WES
i have WES data for normal and I have RNA seq only for tumor. I want to use the RNA seq data to detect somatic driver mutations and I want to pair it... -
Key Considerations for Whole Exome Sequencing
http://blog.genohub.com/key-consider...me-sequencing/
- Should I choose Whole Genome Sequencing or Whole Exome Sequencing
- How
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Calculating coverage for regions with at least 1X for every nucleotide
Hi there, I have some WES samples been mapped.
Without using the manufacture interval BED file, I am wondering if there is any way to... -
Exome sequencing CNV calling software: CODEX
Hi all,
CODEX (COpy number Detection by EXome sequencing) is online! The paper is available here (http://nar.oxfordjournals.org/content/...Last edited by yuchioj; 03-26-2015, 12:30 PM. -
WES - how deep do you sequence your germline control
Hello Seqers,
we currently do WES with a mean coverage of ~120x for tumor as well as the germline samples. Since we only use the germline... -
Finding CNVs in tumors, no control, WES - Which programs should I use?
Hi everyone,
I need to find CNVs in several samples analyzed by Whole Exome Sequencing. The thing is, there is no control sample and they...
