Hi,all,
I am using Bambus (version 2.33) for scaffolding our 1.1 G genome. Before using the Bambus for our data, I first tested the Bambus with the test data in the Bambus package and everything was fine.
However, Using Bambus for our data, it always crashed at the step 400, and reported that the Grommit script failed. Someone in the Abyss discuss group mentioned that Bambus is incapable of scaffolding genomes > 100 M. But, I am not sure this is the reason for our data?
My question is that dose any one has the experience of scaffolding big genome (here I mean >1 G bp genome) by Bambus?
Shaohua
I am using Bambus (version 2.33) for scaffolding our 1.1 G genome. Before using the Bambus for our data, I first tested the Bambus with the test data in the Bambus package and everything was fine.
However, Using Bambus for our data, it always crashed at the step 400, and reported that the Grommit script failed. Someone in the Abyss discuss group mentioned that Bambus is incapable of scaffolding genomes > 100 M. But, I am not sure this is the reason for our data?
My question is that dose any one has the experience of scaffolding big genome (here I mean >1 G bp genome) by Bambus?
Shaohua
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