Hi,
I'm running coveragebed to calculate the number of read count in each transcript of tophat alignment result by using the following command:
Does anybody knows what is the 70, 1059, 26059, 0.0406386 represent?
I know that 0.0406386 is obtained from 1059/26059.
Is it 1059 refer to total number of read aligned to the transcript and 26059 represent the transcript length? How about 70?
Kindly correct me if I'm wrong.
Thanks for any advice.
I'm running coveragebed to calculate the number of read count in each transcript of tophat alignment result by using the following command:
Code:
/bedtool/arq5x-bedtools-26a87ab/bin/coverageBed -abam accepted_hits.bam -b transcripts.bed > transcripts.cov.txt cat transcripts.cov.txt gi|224589800|ref|NC_000001.10| 8378168 8404227 "ENSG00000162426" [B]70 1059 26059 0.0406386[/B]
I know that 0.0406386 is obtained from 1059/26059.
Is it 1059 refer to total number of read aligned to the transcript and 26059 represent the transcript length? How about 70?
Kindly correct me if I'm wrong.
Thanks for any advice.
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