I silently released euler-sr 1.0 a month ago which has many improvements over the version last mentioned on this site.
After getting some feedback and speeding up some spots, version 1.1 is posted online at the euler portal: http://euler-assembler.ucsd.edu/portal
The updates in this include:
Better integration of multiple clone libraries.
Fast k-mer counting.
Support for multiple cores in error correction (Thanks to Wayne Pfeiffer at the San Diego Supercomputer Center).
There will be a couple of more changes in the next two weeks that will greatly increase the size of genome that may be assembled.
I appreciate all your feedback.
Mark Chaisson
UCSD Bioinformatics
After getting some feedback and speeding up some spots, version 1.1 is posted online at the euler portal: http://euler-assembler.ucsd.edu/portal
The updates in this include:
Better integration of multiple clone libraries.
Fast k-mer counting.
Support for multiple cores in error correction (Thanks to Wayne Pfeiffer at the San Diego Supercomputer Center).
There will be a couple of more changes in the next two weeks that will greatly increase the size of genome that may be assembled.
I appreciate all your feedback.
Mark Chaisson
UCSD Bioinformatics
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