Hi to everybody,
I was wondering about the existence of some standard for representing SNP in a genome. Usually SNPs are codified in a FASTA file simply putting two square brackets around the SNP position (AAACG[T/G]GAT), but obviously this format does not help in having a general view of all the SNP.
Somebody knows some standard format for SNP representation?
The tools for SNP-finding with de novo technologies like MAQ use their own format for SNP representation?
Thanks
I was wondering about the existence of some standard for representing SNP in a genome. Usually SNPs are codified in a FASTA file simply putting two square brackets around the SNP position (AAACG[T/G]GAT), but obviously this format does not help in having a general view of all the SNP.
Somebody knows some standard format for SNP representation?
The tools for SNP-finding with de novo technologies like MAQ use their own format for SNP representation?
Thanks
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