When I try to use fastq-dump to convert SRA files to fastq, I get the following error:
I have no idea what this means or how to fix it. I tried the 64-bit version too but that didn't work either (I'm running Mac OS 10.6.7). I've gotten fastq-dump to work just fine on a linux machine but for some reason the mac version is giving me this problem. Can anyone shed some light?
Code:
> ../../sratoolkit.2.1.2-mac32/fastq-dump --dumpbase SRR121550.sra 2011-08-03T09:31:05 fastq-dump.2.1.2 err: path incorrect while opening manager within database module - Failed SRR121550 Written 0 spots
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