Hi All,
When I do RNAseq Quality Trimmming using Perl scripts in Terminal, these Options appear:
--type <num> 0=standard trimming, 1=adaptive trimming, 2=windowed adaptive trimming. Default 0
-- qual-threshold <num> quality threshold for trimming, default 20
-- length-threshold <num> length threshold for trimming, default 20
... ...
Could anyboday explain the differences of 0=standard trimming, 1=adaptive trimming, 2=windowed adaptive trimming? and the criteria about setting length-threshold??
Thanks a lot in advance.
When I do RNAseq Quality Trimmming using Perl scripts in Terminal, these Options appear:
--type <num> 0=standard trimming, 1=adaptive trimming, 2=windowed adaptive trimming. Default 0
-- qual-threshold <num> quality threshold for trimming, default 20
-- length-threshold <num> length threshold for trimming, default 20
... ...
Could anyboday explain the differences of 0=standard trimming, 1=adaptive trimming, 2=windowed adaptive trimming? and the criteria about setting length-threshold??
Thanks a lot in advance.
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