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  • [mic]
    replied
    As i know bowtie stores the $ as an A which must be intent at LF-mapping.

    Anyone correct me if I'm wrong.

    Leave a comment:


  • jay2008
    started a topic bowtie index file

    bowtie index file

    in bowtie index file, each nt (A,C,T,G) is kept by 2 bits. but how to do with the fifth nt '$'?

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