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  • How to estimate time needed for velvetg

    I ran velveth on a 9GB fastaq of Illumina ChipSeq data. It took overnight to generate 5.3GB Sequences and 5.0GB Roadmaps files.

    I'm running velvetg to assemble them. It has been 6 days and has not finished yet. It's displaying [514085.402570] 92705000 nodes visited at this moment.

    How to calculate how many more days it may take to finish assembly?


    My machine is 32GB RAM, Ubuntu.

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