I ran velveth on a 9GB fastaq of Illumina ChipSeq data. It took overnight to generate 5.3GB Sequences and 5.0GB Roadmaps files.
I'm running velvetg to assemble them. It has been 6 days and has not finished yet. It's displaying [514085.402570] 92705000 nodes visited at this moment.
How to calculate how many more days it may take to finish assembly?
My machine is 32GB RAM, Ubuntu.
I'm running velvetg to assemble them. It has been 6 days and has not finished yet. It's displaying [514085.402570] 92705000 nodes visited at this moment.
How to calculate how many more days it may take to finish assembly?
My machine is 32GB RAM, Ubuntu.