Hi,
I downloaded ALLPATHS from MIT site ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/ but I have a lot of problems running it on the test example that you can download with the program.
I spend almost one day to compile it, and I was also oblige to comment a line of the makefile.
Now I'm trying to use it but I'm having troubles. The first step of the procedure consist in exporting the data calling allpath with the option TARGETS=import .
After few second I received the error message:
PrepareAllPathsInput SOURCE_DIR=$(SOURCE) DATA_DIR=$(DATA) READS_OUT="reads_orig" STATS_IN=expected_lib_stats
/bin/sh: PrepareAllPathsInput: not found
make: *** [example/Staph/MyTestData/ploidy] Error 127
My question are: anybody has this problem? There is somebody that was able to install and use ALLPATHS?
Francesco
I downloaded ALLPATHS from MIT site ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/ but I have a lot of problems running it on the test example that you can download with the program.
I spend almost one day to compile it, and I was also oblige to comment a line of the makefile.
Now I'm trying to use it but I'm having troubles. The first step of the procedure consist in exporting the data calling allpath with the option TARGETS=import .
After few second I received the error message:
PrepareAllPathsInput SOURCE_DIR=$(SOURCE) DATA_DIR=$(DATA) READS_OUT="reads_orig" STATS_IN=expected_lib_stats
/bin/sh: PrepareAllPathsInput: not found
make: *** [example/Staph/MyTestData/ploidy] Error 127
My question are: anybody has this problem? There is somebody that was able to install and use ALLPATHS?
Francesco
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