I am using RepeatMasker with custom library of sequences to be masked in
the query. Here is the command that I have been using:
------------------------------------
# ./RepeatMasker -q -no_is -nolow -lib repeats.fasta genome.fa
------------------------------------
here is the output along with error:
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
WARNING: Retrying batch ( 53 )...
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
WARNING: Retrying batch ( 53 )...
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
FATAL ERROR: RepeatMasker giving up. One or more
batches failed! Unfortunately this type of error
cannot be recovered from. Please submit this output
to the feedback page at the repeatmasker website:
Further details about this problem may be found in
the directory:
/RepeatMasker/RM_5858.WedOct261410592011
--------------------------
The RM_5858.WedOct261410592011 directory consists of empty log file and does
not have any clues about the error.
Please advice how this error could be resolved.
the query. Here is the command that I have been using:
------------------------------------
# ./RepeatMasker -q -no_is -nolow -lib repeats.fasta genome.fa
------------------------------------
here is the output along with error:
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
WARNING: Retrying batch ( 53 )...
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
WARNING: Retrying batch ( 53 )...
identifying matches to Lv-repeats.fasta sequences in batch 53 of 11907
WARNING: The search engine returned an error (141)
A search phase could not complete on this batch.
The batch file will be re-run and if possible the
program will resume.
FATAL ERROR: RepeatMasker giving up. One or more
batches failed! Unfortunately this type of error
cannot be recovered from. Please submit this output
to the feedback page at the repeatmasker website:
Further details about this problem may be found in
the directory:
/RepeatMasker/RM_5858.WedOct261410592011
--------------------------
The RM_5858.WedOct261410592011 directory consists of empty log file and does
not have any clues about the error.
Please advice how this error could be resolved.
