Hello,
How to derive the genotype info (e.g. A/B) directly from MAQ alignment? It should call the genotype before SNP calling, but what I get is the SNP calling and not clear which file to get the genotype info for the final SNPs. Thanks.
John
How to derive the genotype info (e.g. A/B) directly from MAQ alignment? It should call the genotype before SNP calling, but what I get is the SNP calling and not clear which file to get the genotype info for the final SNPs. Thanks.
John