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  • Ramprasad
    Junior Member
    • Jun 2011
    • 7

    #1

    min-frags-per-transfrags option in cufflinks

    Hi all,

    I am goin to work with my first transcriptome data and I am planning to use cufflinks for RNA assembly.

    I went through the manual and have a couple of queries

    1) min-frags-per-transfrag
    what is a frag? does it mean an exon in a transcript?

    2) Also what is the significance of "Full read support" attribute in the output?

    Any help would be appreciated.

    Ram

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