Is there anyway to convert plink (.map,.ped) files back to vcf?
I originally converted vcf to plink format files using vcftools, applied some QC in plink and now want to call the QC'd variants using Annovar - however Annovar doesn't accept plink file format, or does it? I can't see on website. Any help/advice is appreciated
Cheers
I originally converted vcf to plink format files using vcftools, applied some QC in plink and now want to call the QC'd variants using Annovar - however Annovar doesn't accept plink file format, or does it? I can't see on website. Any help/advice is appreciated
Cheers
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