I am trying to use annovar to annotate my exome-seq data.
Here is my commend:
summarize_annovar.pl --ver1000g 1000g2011may --verdbsnp 132 --buildver hg19 snp.annovar ./humandb -outfile output.snp
“--ver1000g”was set to “1000g2011may” because I downloaded it from annovar website:
but I still got an error:
Error: the required database file humandb/hg19_ALL.sites.2010_11.txt does not exist. Please download it via -downdb argument by annotate_variation.pl.
Do I need to also get the “hg19_1000g2010nov_all” version?
Could someone please tell me what I’m doing wrong here?
Thanks a lot!
Here is my commend:
summarize_annovar.pl --ver1000g 1000g2011may --verdbsnp 132 --buildver hg19 snp.annovar ./humandb -outfile output.snp
“--ver1000g”was set to “1000g2011may” because I downloaded it from annovar website:
but I still got an error:
Error: the required database file humandb/hg19_ALL.sites.2010_11.txt does not exist. Please download it via -downdb argument by annotate_variation.pl.
Do I need to also get the “hg19_1000g2010nov_all” version?
Could someone please tell me what I’m doing wrong here?
Thanks a lot!
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