Hi all,
Just mapped a solexa paired end dataset using ./match to create an out.map file. Followed this with carrying out a second paired end solexa chip-seq. Unfortunately the base quality on the 3' end was terrible so only mapped the 5' end using ./maq match (single end).
Can maq merge command be used for 1 paired end map file and 1 single ended map file?
Cheers
L
Just mapped a solexa paired end dataset using ./match to create an out.map file. Followed this with carrying out a second paired end solexa chip-seq. Unfortunately the base quality on the 3' end was terrible so only mapped the 5' end using ./maq match (single end).
Can maq merge command be used for 1 paired end map file and 1 single ended map file?
Cheers
L