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  • DrD2009
    Member
    • Oct 2009
    • 88

    #1

    Counting of regions within a segment

    Hello everyone. I have a scripting/coding question.

    I'm trying to run an analysis to find the number of regions found within a particular segment length throughout a chromosome.

    For instance:


    Chr1-



    In this case the segments are broken into 50 basepair lengths along the entire chromosome, but a way to vary that length would be desired. The starting file would most likely compose of either a .BED or .GFF

    The desired output of such an analysis for the example above would be as such:

    Code:
    [Segment] \t [Count_of_regions]
    1-49		4
    50-99		5	
    100-149		4
    150-199		6
    Any help with this would be greatly appreciated.


    Thanks.

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