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I want to used cnvHMM but it requires a cns file. I am not sure what exactly a cns file is so if anyone has some knowledge, it would be appreciated.
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Last edited by dmacmillan; 01-11-2012, 09:26 AM. -
readme fiel not clear
Hi
The cnvNMM READMe file is not clear. I could not figure out the format or type of cnsfile. Some idea? -
I think cns file is the consensus read depth file.
Just came across samtools mpileup for Variant and SNP calls..
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thank you ganygan25Comment
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Hi,
I'm also trying to get this to work. Did samtools mpileup work? If so what did you try?
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