Hi all,
I have a fasta file with contigs and I would like to plot the lengths of the sequences. I have only found prinseq-graphs that can do that, but it requires me to install a bunch of perl modules (I believe - I can't find any installation information). Is there an easier way of doing this? Preferably a simple script or java program. Here's an example of some of my data:
I would like to plot the lengths similar to this:
I have a fasta file with contigs and I would like to plot the lengths of the sequences. I have only found prinseq-graphs that can do that, but it requires me to install a bunch of perl modules (I believe - I can't find any installation information). Is there an easier way of doing this? Preferably a simple script or java program. Here's an example of some of my data:
Code:
>NODE_4_length_492_cov_13.477642 ACGGAGTATGACTTTGTATTGGTGGGTCCTTGCACTGAACCAGCCCCTCTGGTTGTGCAT AGGGGAGGCTTGTGGGAATGTGGAAAGAAATTGGCGTCCTTTACACCTGTTATACAAGAC CAGGATCTTGAAGTATTTGTGAGAGAGGTTGGGGACACTTCGTCTGACCTGCTGATTGGG GCATTGAGTGATATGATGATAGACAGGCTGGGGTTAAGGGTGCAGTGGTCAGGGGTGGAC ATTGTCTCCACACTTAGGGCTGCAGCGCCGAACTGCGAGGGGATCTTGAGTGCGGTTCTT GAGGCAGTGGACAACTGGGTGGAGTTCAAAGGTTATGCTCTCTGTTATAGTAAGTCAAAG GGGAAGGTGATGGTGCAGTCAAGTGGTGGTAAATTGAGACTGAAGGGCAGAACATGTGAG GAGTTGACTAGGAAGGATGAATGCATCGAAGACATTGAGTAGTCTCCTGGCGATGGTTGG CTCCCCCGGGGGGGCCCCCGGCGGGGGGTCCCCC >NODE_7_length_554_cov_17.906137 ATTTATTTTGAGTCTTATGTGAAACCACGTGAAGGACCCCAATGTTCTTGTAGTCGCAAC AAATGGTCTCACATAAGACTCAAAATAAATCTGCCTCATGAAATTGTCAACAGCATCACT AGTGCTCACCACTCTTTCCTCCACTATGGGTTCATGTGTCCTACTGTGAGACAGCCTCAA TTCAGATGATAACACAATGTAATGTTCCTCTCTTTTCCATTTCACAATATGTGAGACAAG AGATAAGGCTTCACAGTTAACATCCAACGCAACACAGAGATCTAGGAATTTTATTCTAGG TGACCACTTCATTTTGGTTGACGCTAGATCACTCATGAATGGCAATATGTGCTTCTCAAA CACCGATGGGTACAGCCTTCTCAAAGAATGAATGATGTGATTCAAACCAACCCTATCCTC TAATAGTTTTGATGCAGTTGGCTTTAAAGGAAAATAGTCACAAGGGTTATGCTTGAAAAA ATCCAATACCTTAACTGTCTTAGGTTCCCCTAAGACCCATGCACCCAACTCTATTGCAGT TGATAAGGAGATGCACATATAATCCCATAACAAGGG >NODE_8_length_274_cov_16.138685 CCAAAATAAGTTGTCTTCCACTTTCACTCGAGGTGCGCAGAAATTGCTATCTGAAGCTAT CAACAAGTCTGCATTCCAGAGCTCCATTGCATCTGGCTTTGTGGGGTTATGCAGAACATT GGGTAGCAAATGTGTTCGGGGACCAAATAAGGAGAATCTGTATATTAAGTCCATTCAGTC TCTGATTTCTGATGTCAAGGGAATCAAATTATTGACAAATTCTAATGGCATTCAGTATTG GCGGGTTCCGCTAGAACTTAGAGATGGGAGTGGAAGTGAAAGTGTGGTCAGTTATT
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