Hi,
Could you please teach me how to get raw read count for each gene/transcript after tophat mapping (RNAseq mapping against reference genome)? I tried to use cufflinks/cuffdiff, but I got only FPKM for each gene.
Thanks in advance,
Could you please teach me how to get raw read count for each gene/transcript after tophat mapping (RNAseq mapping against reference genome)? I tried to use cufflinks/cuffdiff, but I got only FPKM for each gene.
Thanks in advance,
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