Dear all,

I used CNV-Seq to call my CNVs, but I don't understand the output file with the following columns:

chromosome, start, end, test, ref, position, log2, p.value, cnv, cnv.size, cnv.log2, cnv.p.value

What is the real CNV-position (start and end)? Is the start at "position" and the end at "position+cnv.size"?

What is the difference bewteen cnv.p.value and p.value?

What is the meaning of cnv.log2 and log2?

What is the meaning of the values for "ref" and "test"?

Can sombody help me or recommend a documentation, which is easy to understand. I would be very happy about any help.

Best regards

Robby

I used CNV-Seq to call my CNVs, but I don't understand the output file with the following columns:

chromosome, start, end, test, ref, position, log2, p.value, cnv, cnv.size, cnv.log2, cnv.p.value

What is the real CNV-position (start and end)? Is the start at "position" and the end at "position+cnv.size"?

What is the difference bewteen cnv.p.value and p.value?

What is the meaning of cnv.log2 and log2?

What is the meaning of the values for "ref" and "test"?

Can sombody help me or recommend a documentation, which is easy to understand. I would be very happy about any help.

Best regards

Robby

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