I have noticed that during the last year, the "TopHat consensus" has shifted somwhat towards mapping to both genome and transcriptome, e g as in http://bioinformatics.oxfordjournals.../13/i383.short
I think for Bharat Iyengar's case, it does not seem wrong to map to the transcriptome.
I think for Bharat Iyengar's case, it does not seem wrong to map to the transcriptome.
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