Hello,
Im learning to use SOAP2 currently.
Ive manage to build the 13 index files using chr1.fa
So now i want to test run the alignment quick start using this:
./soap –a <reads_a> -D <index.files> -o <output></output>
from where should i get the reads_a (should i put the chr1.fa file in same directory as soap & 2bwt-builder?) & which index.files to use?
What im trying to do is to align the refseq chr1.fa with the same seq chr1.fa. so i would get 100% alignment, right?
Your reply is much appreciated. TQ
Im learning to use SOAP2 currently.
Ive manage to build the 13 index files using chr1.fa
So now i want to test run the alignment quick start using this:
./soap –a <reads_a> -D <index.files> -o <output></output>
from where should i get the reads_a (should i put the chr1.fa file in same directory as soap & 2bwt-builder?) & which index.files to use?
What im trying to do is to align the refseq chr1.fa with the same seq chr1.fa. so i would get 100% alignment, right?
Your reply is much appreciated. TQ
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