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  • Graphical visualization of GFT files

    Hello all
    Using tophat, cufflinks and cuffmerge, I found lots of new genes.
    I would like to graphically visualize the information of the GFT files in the genome sequence (something like artemis).
    Do you know of a software to do this? Or, converting the GFT file to another format would make it possible?
    Thank you in advance.
    Charley

  • #2
    I assume you mean GTF file right? Check out IGV from the Broad (http://www.broadinstitute.org/igv/)
    Justin H. Johnson | Twitter: @BioInfo | LinkedIn: http://bit.ly/LIJHJ | EdgeBio

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    • #3
      Thank you.
      It helps a lot
      Charley

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