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  • LauraSmith
    Junior Member
    • Dec 2011
    • 4
    #1

    convention of representing alleles in a BED file

    Does anyone know what is the convention of representing alleles in a BED file. For a given genomic coordinate, should the alleles be always represented according to positive strand? (even if we are refering to a variant on the negative strand?)

    Any answer is greatly appreciated.

    Thank you.
    Laura
    Tags: allele on bed files
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