Hi! I'm trying to run cummeRbund on a cufflinks dataset without a reference annotation of any sort (i.e. just the transcripts assembled from bowtie/tophat results), which leads to my cds.diff being empty.
Hence, I get the following error when trying to create a cummeRbund database:
How do I get around this (other than by using a reference annotation)? I'd still like to be able to explore the gene/tss/isoform information?
Thanks in advance!
Hence, I get the following error when trying to create a cummeRbund database:
Writing CDS table
Error in sqliteExecStatement(con, statement, bind.data) :
bind.data must have non-zero dimensions
Error in sqliteExecStatement(con, statement, bind.data) :
bind.data must have non-zero dimensions
Thanks in advance!
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