Hi all,
I wonder if anyone knows the minimal read length accepted by Bowtie. Basically, I have a set of short motif sequences (7mers) and want to see where they map to the mouse reference genome. I tried Bowtie, but it seems to not work because of the short read length (7 bp).
Any suggestions will be very much appreciated!
Thanks,
Yue
I wonder if anyone knows the minimal read length accepted by Bowtie. Basically, I have a set of short motif sequences (7mers) and want to see where they map to the mouse reference genome. I tried Bowtie, but it seems to not work because of the short read length (7 bp).
Any suggestions will be very much appreciated!
Thanks,
Yue
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