Hey all,
Has anyone utilized DNAnexus to analyze RNA-Seq data? They allow you to analyze 10 samples for free and I was able to get my RNA-Seq data mapped and aligned, but oddly they do not support differential expression or statistical analysis on their website? The files I got back have RPKM and RMS-normalized RPKM values along with the gene names and IDs. Are there any programs I can plug these values into to perform the differential expression and statistical analysis on my replicates and perform visualizations?
This is my first time performing RNA-Seq and am still trying to keep my head above water. Thanks for any help!
JMo
Has anyone utilized DNAnexus to analyze RNA-Seq data? They allow you to analyze 10 samples for free and I was able to get my RNA-Seq data mapped and aligned, but oddly they do not support differential expression or statistical analysis on their website? The files I got back have RPKM and RMS-normalized RPKM values along with the gene names and IDs. Are there any programs I can plug these values into to perform the differential expression and statistical analysis on my replicates and perform visualizations?
This is my first time performing RNA-Seq and am still trying to keep my head above water. Thanks for any help!
JMo
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