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  • #1

    Trinity probpath missing from successful butterfly runs

    My issue: I run trinity and 1 butterfly job fails. I rerun butterfly for the failed job and it successfully finishes. I go to concatenate all my successful jobs

    find trinity_out_dir/chrysalis -name "*allProbPaths.fasta" -exec cat {} + > Trinity.fasta

    When I looked at Trinity.fasta there are only sequences for the failed job. I check to see if allProbPaths.fasta files exist for the original "successful" jobs and find that they do not...

    Anyone else ever seen this? Should I just rerun butterfly for all my jobs with more RAM?

    I thought that the program was specifically made to avoid having to rerun all jobs when just 1 or 2 fail.
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